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Mixed Models in Sports and Health

As in many other research areas, mixed models have become widely applied in sports science and related health issues. Within sports science, different branches account for the interests of different stakeholders; general managers, coaches, teams, supporters, scientists, academics. Human performance and medicine (treatment and prevention of injuries) lie behind them all and these models are a way to account for within subject variability, time-dependent covariates, and nested data.

On the competition side, efforts have been made in the literature to find ways to model player performance. Casals and Martínez (2013) approach this problem in the context of the NBA basketball league results by considering a balanced design where player is the random intercept and the forward stepwise approach to model selection by Pinheiro and Bates (2000) has been adopted to determine additional factors to be included in the final model. The great advantage of their proposed models for points and win scores over previous studies is that they account for the variation in players´ characteristics and therefore can predict potential variation in player performance using Linear Mixed Models (LMM) and Generalized Linear Mixed models (GLMM), and are consequently of great help for coaches, managers and other decision makers.

A similar methodology has been followed to predict scoring ability in the English football Premier League by McHale and Szczepański (2014). You may recall the post by Hèctor Perpiñán on calculating results probabilities via simulation. While in Perpiñán´s study only teams´ results were considered for the calculations, McHale and Szczepański´s mixed modelling approach allows for the inclusion of players´ ability to create and convert shots as a disaggregated factor from chance. The accuracy in the prediction of their models in this paper shows again the relevance of models that allow the inclusion of players´ characteristics (rather than just teams´).

Of particular note to our readers is the trend towards the implementation of mixed models in open source software exemplified in the aforementioned papers which use R (R Core Team, 2012) for their modelling, in particular packages nlme and lme4

In community exercises for promoting physical activity like the one described in Okely et al. (2011), one research aim has been to determine policies and interventions that help to encourage exercising during adolescence in order to alleviate risk factors in the long run. This particular school-based randomised controlled trial used mixed models to account for the hierarchical structure of the data (32 schools from four geographical regions). According to the authors, one of the greatest advantages of the methodology is that it “incorporates all available data allowing for the analysis of partial datasets created when a participant drops out of the study or misses a study visit.”

Moving on to health applications, injury prediction, for instance in baseball pitchers and athletes, can be modelled by deploying similar approaches to determine the existence of statistically significant differences between groups and within days post-injury for example.

Finally, in veterinary epidemiology mixed modelling has become equally mainstream, as discussed in a recent article by Stryhn and Christensen (2014). As an example of an application, animal risk factors associated with health disorders in sport can also be modelled via these techniques. Visser et al. (2013) have studied the effect in race horses in the Netherlands via a cross-sectional study and have considered a random farm effect. Commercial software has been used in these two previous examples. – SAS (PROC MIXED) and GenStat (GLMM)- which are again of common use in the application of mixed models.

As stated by Casals and Martínez (2013), phenomena like Moneyball have raised the profile of sports data analysis. For researchers, big data and more widely, the intrinsic complex structure of the data coming from the aforementioned fields –and I would add software availability- have stimulated application of these types of models and they seem to be here to stay…

These are some of the examples that we have found but we will sure be missing some other very interesting ones so please let us know…Are you a researcher in the area and would like to tell us about your experience? Have you used this sort of model in this or other areas and are you willing to share your experience? 

Main references:

Casals, M., & Martinez, J.A. (2013). Modelling player performance in basketball through mixed models Journal of Performance Analysis in Sport, 13 (1), 64-82

McHale, I., & Szczepański, L. (2014). A mixed effects model for identifying goal scoring ability of footballers Journal of the Royal Statistical Society: Series A (Statistics in Society), 177 (2), 397-417 DOI: 10.1111/rssa.12015

Okely, A., Cotton, W., Lubans, D., Morgan, P., Puglisi, L., Miller, J., Wright, J., Batterham, M., Peralta, L., & Perry, J. (2011). A school-based intervention to promote physical activity among adolescent girls: Rationale, design, and baseline data from the Girls in Sport group randomised controlled trial BMC Public Health, 11 (1) DOI: 10.1186/1471-2458-11-658

Visser, E., Neijenhuis, F., de Graaf-Roelfsema, E., Wesselink, H., de Boer, J., van Wijhe-Kiezebrink, M., Engel, B., & van Reenen, C. (2013). Risk factors associated with health disorders in sport and leisure horses in the Netherlands Journal of Animal Science, 92 (2), 844-855 DOI: 10.2527/jas.2013-6692

ResearchBlogging.org

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A brief introduction to the SAS® System: what is and how does it work?

In previous posts on this site, comparisons among the most used statistical packages available for scientists were conducted, pointing out their strengths and weaknesses.

Although nowadays there is a trend to use open source programs for data science development, there are some commercial statistical packages which are also important since they make our scientist life easier. One of them is called Statistical Analysis System® (SAS).

SAS System was founded in 1970s and since then it is leading product in data warehousing, business analysis and analytical intelligence. It is actually the best  selling all-in-one database software. In other words, SAS can be described as an Exporting-Transformation-Loading (ETL), Reporting and Forecasting tool. This makes SAS a good option for Data warehousing. It could be also considered as a statistical software package that allows the user to manipulate and analyze data in many different ways.

The main basic component of the SAS program is the Base SAS module which is the part of the software designed for data access, transformation, and reporting. It contains: (1) data management facility – extraction, transformation and loading of data – ; (2) programming language; (3) statistical analysis and (4) output delivery system utilities for reporting usage. All these functions are managed by means of data and call procedures. In the following sections some introductory and basic examples will be described:

(a) Generating new data sets.

It is possible to generate new data sets by using the SAS Editor environment (place where the code is written and executed). Suppose we want to create a data set of 7 observations and 3 variables (two numerical and one categorical).

data one;
input gender $ age weight;
cards;
F 13 43
M 16 62
F 19 140
F 20 120
M 15 60
M 18 95
F 22 75
;
run;

The SAS code shown above will create the desired data set called “one”. As gender variable is categorical – the first variable-,  its values are “M” for MALE and “F” for FEMALE. The dollar sign ($) is used when you have a text variable rather than a numerical variable  (i.e., gender coded as M, F rather than as 1 denoting male and 2 denoting female).

(b) Statistical analysis

For the performance of a basic descriptive analysis, – percentages and mean computations – the next procedures should be executed:

·         For frequencies and percentage computation.

proc freq data = one;
tables gender;
run;

·         Descriptive analysis for continuous variables.

proc means data = one n mean std;
var age weight;
run;

As it can be observed, it is really easy to remember which statistical procedure to use according to the type of variable: for categorical data proc freq procedure  and proc means  for continuous data.

(c) Output

Another important issue is the way the results are shown. The SAS statistical package has improved this section. Before the release of the version 9.0 – I think so!- , one had to copy and paste all the results from the output window to a WORD document in order to get a proper and saved version of the results. From version 9.0, things have changed: All results can be delivered to a PDF, RTF or even HTML format. As SAS user, I can say that this has been a good idea, since not only I no longer have to waste lots of time doing copy-paste, but also the not so useful results can be left unprinted. That has been a great leap!!!  For example, if you want to have the results in PDF format, you should follow the next instructions:

ods pdf;
proc means data = one n mean std;
var age weight;
run;
ods pdf close;

This code generates a PDF file where shows the mean and standard deviation of the age  and  weight  variable of the one data set.

Because of its capabilities, this software package is used in many disciplines, including the medical sciences, biological sciences, and social sciences. Knowing the SAS programming language will likely help you both in your current class or research, and in getting a job. If you want to go further in SAS programming knowledge, The Little SAS Book by Lora Delwiche and Susan Slaughter is an excellent resource for getting started using SAS. I also used it when I started learning SAS. Now it is your turn!!

Have a nice holiday!

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SPSS, SAS or R…which one to choose?

Performing statistical analyses by hand in the era of new technologies would seem crazy.  Nowadays, there are three main statistical programs for doing statistics: IBM SPSS, SAS  and R, as it can be read in a more extensive post of this site. Sometimes, biostatisticians need to use more than one package to carry out their analyses.  This means that users of these programs have to move from one to another environment, from front-end to back-end, using different wizard and graphical interfaces, wasting in most occasions an important amount of time. Because of that, in this post I would like to address the differences between the aforementioned programs, pointing out the advantages and the most suitable usage of each software from my personal point of view.

For a good choice of a statistical program, one should take into account several issues such as the following:

1. Habit: It refers to how the biostatistician has gotten used to one particular statistical program and does not need to learn something new.

2. Distrust of freeware: it refers to the license type of the package.

3. Availability of statistical procedures:  are the most used statistical methods included in the package?

4. Management of huge data sets: how big data sets are handled.

Focusing on the first point, it is remarkable that programming with these three packages is quite easy. All of them provide a choice to write the syntax code and run it whenever you want. This also can be applied to anyone who might have to send you the code, including managers or colleagues. Besides, IBM SPSS and R offer a friendly interface allowing the alternative of not learning the syntax procedure. These could be the main reasons for which people continue doing data analysis for a long period with the same statistical program, making a better researcher life!

Another important issue is whether the distribution is freeware or not. When starting to work as a biostatistician, one soon notices the high cost of statistical software licence fees. As you might know, IBM SPSS and SAS are commercial distributions and  R is freeware. Although IBM SPSS and SAS are quite expensive, one should think about the benefits that both programs offer in the long term. For example, some researchers do not trust R, and think its use does not ensure getting the correct results. In those cases, trust comes at a price. Regadless of what they think, R has grown rapidly in the past few years, offering competition to other softwares.

The availability of the most used statistical procedures is another important point to be taken into account.  All of them have integrated in their environments the most popular statistical methods (regression analysis, correspondence analysis, etc..) but sometimes, there is a need for implementing more sophisticated procedures.  As IBM SPSS and SAS are paid-for distributions, they do not let the user to program it, they have fixed instructions. On the contrary, R could be understood as a combined and customized software of multiple small packages to solve the problems. Whenever you have a problem, it is most likely that you will find a solution for it in the packages repository.

Finally, as for the management of huge data sets, it is noteworthy that SAS is the winner. SAS has a robust platform for handling big data sets and it does not  need the whole computer memory for the analysis. In this sense, R still has a long way to go even though the performance of R in this area has recently been exponentially increased. I would also say that IBM SPSS does not have enough support.

To sum up, I would like to give a couple of advices. From the point of view of my experience, I would recommend to use IBM SPSS for medical researchers who start doing statistics: it is quite easy and intuitive and there is no need to learn the syntax. But not for a long period of time: learning basic R coding is not difficult and will be sufficient for the requirements of this type of researchers. It is only a small effort but really worthy! Nonetheless, for advanced researchers and biostatisticians, a combination between SAS and R would be perfect – that is what I do!, I would say I am RSAS user… -. Now, you have the choice: IBM SPSS, SAS or…R?